fetch_ahba()¶
- Usage [source]:
-
genes = fetch_ahba();
-
- Description:
Fetch Allen Human Brain Atlas microarray expression data from all donors and all genes (author: @saratheriver)
- Inputs:
csvfile (empty or string) – Path to downloaded csvfile. If empty (default), fetches microarray
expression data from the internet. For more threshold and parcellation options, download csvfile from here: https://github.com/saratheriver/enigma-extra/tree/master/ahba. If empty, fetches microarray expression data from the internet (aparc and stable r > 0.2).
- Outputs:
genes (table) - Gene co-expression data, size = [82 x 15633]