Matlab API¶
enigma datasets
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Loads the ENIGMA example dataset (from one site - MICA-MNI Montreal; author: @saratheriver) |
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Outputs summary statistics for a given disorder (author: @saratheriver) |
import / export
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Returns number of faces/triangles for a surface (author: @saratheriver) |
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Returns vox2ras transform for a surface (author: @saratheriver) |
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Writes cifti file (authors: @NicoleEic, @saratheriver) |
connectivity matrices
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Load functional connectivity data (author: @saratheriver) |
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Load functional connectivity data (cortical + subcortical in one matrix; author: @saratheriver) |
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Load structural connectivity data (author: @saratheriver) |
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Load structural connectivity data (cortical + subcortical in one matrix; author: @saratheriver) |
gene co-expression data
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Fetch Allen Human Brain Atlas microarray expression data from all donors and all genes (author: @saratheriver) |
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Outputs names of GWAS-derived risk genes for a given disorder |
spin permutations
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Spin permutation (author: @saratheriver) |
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Extract centroids of a cortical parcellation on a surface sphere (authors: @frantisekvasa, @saratheriver) |
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Rotate parcellation (authors: @frantisekvasa, @saratheriver) |
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Generate a p-value for the spatial correlation between two parcellated cortical surface maps (authors: @frantisekvasa, @saratheriver) |
surface plotting
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Plot cortical surface with lateral and medial views (authors: @MICA-MNI, @saratheriver) |
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Plot subcortical surface with lateral and medial views (author: @saratheriver) |
histology
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Stratify regional data according to BigBrain statistical moments (authors: @caseypaquola, @saratheriver) |
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Stratify parcellated data according to the BigBrain gradient (authors: @caseypaquola, @saratheriver) |
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Stratify parcellated data according to von Economo-Koskinas cytoarchitectonic classes (authors: @caseypaquola, @saratheriver) |
re-order subcortical data matrix
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Re-order subcortical volume data alphabetically and by hemisphere (left then rightl; author: @saratheriver) |
parcellation
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Map parcellated data to the surface (authors : @MICA-MNI, @saratheriver) |
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Map surface data to a parcellation (authors : @MICA-MNI, @saratheriver) |