fetch_ahba()

Usage [source]:
genes = fetch_ahba();
Description:
Fetch Allen Human Brain Atlas microarray expression data from all donors and all genes (author: @saratheriver)
Inputs:
  • csvfile (empty or string) – Path to downloaded csvfile. If empty (default), fetches microarray

expression data from the internet. For more threshold and parcellation options, download csvfile from here: https://github.com/saratheriver/enigma-extra/tree/master/ahba. If empty, fetches microarray expression data from the internet (aparc and stable r > 0.2).

Outputs:
  • genes (table) - Gene co-expression data, size = [82 x 15633]